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 | Acceso al texto completo restringido a Biblioteca INIA Treinta y Tres. Por información adicional contacte bibliott@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Treinta y Tres. |
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Fecha : |
11/05/2018 |
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Actualizado : |
28/05/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
MONTEVERDE, E.; ROSAS, J.E.; BLANCO, P.H.; PÉREZ DE VIDA, F.; BONNECARRERE, V.; QUERO, G.; GUTIERREZ, L.; MCCOUCH, S. |
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Afiliación : |
ELIANA MONTEVERDE, Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, USA.; JUAN EDUARDO ROSAS CAISSIOLS, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; PEDRO HORACIO BLANCO BARRAL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BLAS PEREZ DE VIDA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MARIA VICTORIA BONNECARRERE MARTINEZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; GASTÓN QUERO CORRALLO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; LUCÍA GUTIERREZ, Department of Agronomy, University of Wisconsin, WI, USA.; SUSAN MCCOUCH, Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, USA. |
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Título : |
Multienvironment models increase prediction accuracy of complex traits in advanced breeding lines of rice (O. sativa). |
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Fecha de publicación : |
2018 |
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Fuente / Imprenta : |
Crop Science, 2018, 58:1519-1530. |
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DOI : |
10.2135/cropsci2017.09.0564 |
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Idioma : |
Inglés |
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Notas : |
Article history: Accepted on May 09, 2018. Published online June 21, 2018. |
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Contenido : |
ABSTRACT: Genotype x environment interaction (G x E) is the differential response of genotypes in different environments and represents a major challenge for breeders. Genotype x year-interaction (G x Y) is a relevant component of G x E, and accounting for it is an important strategy for identifying lines with stable and superior performance across years. In this study, we compared the prediction accuracy of modeling G x Y using covariance structures that differ in their ability to
accommodate correlation among environments.
We present the use of these approaches in two different rice (Oryza sativa L.) breeding populations (indica and tropical japonica) for predicting grain yield, plant height, and three milling quality traits—milling yield, head rice percentage, and grain chalkiness—under different cross-validation (CV) scenarios. We also compared model performance in the context of global predictions (i.e., predictions across years). Most of the benefits of multienvironment models come from modeling genetic correlations between environments when predicting performance of lines that have been tested in some environments but not others (CV2). For predicting the performance of newly developed lines (CV1), modeling between environment correlations has no effect compared with considering environments independently. Response to selection of multienvironment models when modeling covariance structures that accommodate covariances between environments was always beneficial when predicting the performance of lines across years. We also show that, for some traits, high prediction accuracies can be obtained in untested years, which is important for resource allocation in small breeding programs. MenosABSTRACT: Genotype x environment interaction (G x E) is the differential response of genotypes in different environments and represents a major challenge for breeders. Genotype x year-interaction (G x Y) is a relevant component of G x E, and accounting for it is an important strategy for identifying lines with stable and superior performance across years. In this study, we compared the prediction accuracy of modeling G x Y using covariance structures that differ in their ability to
accommodate correlation among environments.
We present the use of these approaches in two different rice (Oryza sativa L.) breeding populations (indica and tropical japonica) for predicting grain yield, plant height, and three milling quality traits—milling yield, head rice percentage, and grain chalkiness—under different cross-validation (CV) scenarios. We also compared model performance in the context of global predictions (i.e., predictions across years). Most of the benefits of multienvironment models come from modeling genetic correlations between environments when predicting performance of lines that have been tested in some environments but not others (CV2). For predicting the performance of newly developed lines (CV1), modeling between environment correlations has no effect compared with considering environments independently. Response to selection of multienvironment models when modeling covariance structures that accommodate covariances between environments was always beneficial when pr... Presentar Todo |
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Palabras claves : |
GENOTYPE X ENVIRONMENT INTERACTION; INTERACCIONES GENOTIPO-AMBIENTE. |
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Thesagro : |
ARROZ; GENOTIPOS; RICE. |
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Asunto categoría : |
F30 Genética vegetal y fitomejoramiento |
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Marc : |
LEADER 02635naa a2200289 a 4500
001 1058574
005 2019-05-28
008 2018 bl uuuu u00u1 u #d
024 7 $a10.2135/cropsci2017.09.0564$2DOI
100 1 $aMONTEVERDE, E.
245 $aMultienvironment models increase prediction accuracy of complex traits in advanced breeding lines of rice (O. sativa).$h[electronic resource]
260 $c2018
500 $aArticle history: Accepted on May 09, 2018. Published online June 21, 2018.
520 $aABSTRACT: Genotype x environment interaction (G x E) is the differential response of genotypes in different environments and represents a major challenge for breeders. Genotype x year-interaction (G x Y) is a relevant component of G x E, and accounting for it is an important strategy for identifying lines with stable and superior performance across years. In this study, we compared the prediction accuracy of modeling G x Y using covariance structures that differ in their ability to accommodate correlation among environments. We present the use of these approaches in two different rice (Oryza sativa L.) breeding populations (indica and tropical japonica) for predicting grain yield, plant height, and three milling quality traits—milling yield, head rice percentage, and grain chalkiness—under different cross-validation (CV) scenarios. We also compared model performance in the context of global predictions (i.e., predictions across years). Most of the benefits of multienvironment models come from modeling genetic correlations between environments when predicting performance of lines that have been tested in some environments but not others (CV2). For predicting the performance of newly developed lines (CV1), modeling between environment correlations has no effect compared with considering environments independently. Response to selection of multienvironment models when modeling covariance structures that accommodate covariances between environments was always beneficial when predicting the performance of lines across years. We also show that, for some traits, high prediction accuracies can be obtained in untested years, which is important for resource allocation in small breeding programs.
650 $aARROZ
650 $aGENOTIPOS
650 $aRICE
653 $aGENOTYPE X ENVIRONMENT INTERACTION
653 $aINTERACCIONES GENOTIPO-AMBIENTE
700 1 $aROSAS, J.E.
700 1 $aBLANCO, P.H.
700 1 $aPÉREZ DE VIDA, F.
700 1 $aBONNECARRERE, V.
700 1 $aQUERO, G.
700 1 $aGUTIERREZ, L.
700 1 $aMCCOUCH, S.
773 $tCrop Science, 2018, 58:1519-1530.
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Registro original : |
INIA Treinta y Tres (TT) |
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| Registros recuperados : 14 | |
| 3. |  | MONTEVERDE, E.; SCHEFFEL, S.; REBOLLO, I.; MOLINA, F.; PÉREZ DE VIDA, F.; ROSAS, J.E. Ganancia genética del Programa de Mejoramiento Genético de Arroz de INIA. In: Terra, J. A.; Martínez, S.; Saravia, H.; Mesones, B. (Eds.) Arroz 2021. Montevideo (UY): INIA, 2022. p. 68-70. (INIA Serie Técnica; 262)| Tipo: Capítulo en Libro Técnico-Científico |
| Biblioteca(s): INIA Treinta y Tres. |
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| 4. | | ROSAS, J.E.; MARTÍNEZ, S.; BLANCO, P.H.; PÉREZ DE VIDA, F.; BONNECARRERE, V.; MOSQUERA, G.; CRUZ, M.; GARAYCOCHEA, S.; MONTEVERDE, E.; MOSQUERA, G.; CRUZ, M.; GARAYCOCHEA, S.; MONTEVERDE, E.; MCCOUCH, S.; GERMAN, S.; JANNINK, J.; GUTIÉRREZ, L. Resistencia múltiple a enfermedades tropicales y templadas del tallo y la vaina del arroz. In: UNIVERSIDAD DE LA REPÚBLICA (UDELAR). FACULTAD DE AGRONOMÍA. Resúmenes. Jornadas de Investigación, 8-9 nov., 2018, Montevideo, Uruguay. Montevideo; FAGRO, 2019. p. 19 Trabajo originalmente publicado en: Rosas, J.E.; Martínez, S.; Blanco, P.; Pérez de Vida, F.; Bonnecarrère, V.; Mosquera, G.; Cruz, M. Garaycochea, S.; Monteverde, E.; McCouch, S.; Germán, S.; Jannink, J.L.; Gutiérrez, L. 2018....| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 5. | | MONTEVERDE, E.; GUTIERREZ, L.; BLANCO, P.H.; PÉREZ DE VIDA, F.; ROSAS, J.E.; BONNECARRERE, V.; QUERO, G.; MCCOUCH, SUSAN Integrating molecular markers and environmental covariates to interpret genotype by environment interaction in rice (Oryza sativa L.) grown in subtropical areas. G3: GENES, GENOMES, GENETICS May 1, 2019, v.9 (5), p. 1519-1531. OPEN ACCESS. Article history: Manuscript received February 6, 2019 // Accepted for publication March 5, 2019// Published Early Online March 15, 2019.
Supplemental material available at Figshare: https://doi.org/10.25387/g3.7685636| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : -- - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| 6. | | MONTEVERDE, E.; ROSAS, J.E.; BLANCO, P.H.; PÉREZ DE VIDA, F.; BONNECARRERE, V.; QUERO, G.; GUTIERREZ, L.; MCCOUCH, S. Multienvironment models increase prediction accuracy of complex traits in advanced breeding lines of rice (O. sativa). Crop Science, 2018, 58:1519-1530. Article history: Accepted on May 09, 2018. Published online June 21, 2018.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| 7. | | BONNECARRERE, V.; QUERO, G.; MONTEVERDE, E.; ROSAS, J.E.; PÉREZ DE VIDA, F.; CRUZ, M.; CORREDOR, E.; GARAYCOCHEA, S.; MONZA, J.; BORSANI, O. Candidate gene markers associated with cold tolerance in vegetative stage of rice (Oryza sativa L.). Euphytica, 2015, v. 203 no. 2, p. 385-398. p. 385-398. Received: 17 June 2014 / Accepted: 23 October 2014 / Published online: 2 November 2014| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas; INIA Treinta y Tres. |
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| 8. | | QUERO, G.; GUTIÉRREZ, L.; FERNANDEZ, S.; BLANCO, P.H.; PÉREZ DE VIDA, F.; GARAYCOCHEA, S.; MONTEVERDE, E.; MCCOUCH, M.; ROSAS, J.E.; BERBERIAN, N.; SIMONDIS, S.; BONNECARRERE, V. Genome wide association (GWAS) discovers rice granin quality genes in the starch metabolism, grain size and cell wall synthesis pathways. MV 24 - COMUNICACIONES LIBRES - MV. MEJORAMIENTO VEGETAL In: JOURNAL OF BASIC & APPLIED GENETICS, 2016, Vol.27, Iss. 1 (Supp.). XVI LATIN AMERICAN CONGRESS OF GENETICS, IV CONGRESS OF THE URUGUAYAN SOCIETY OF GENETICS, XLIX ANNUAL MEETING OF THE GENETICS SOCIETY OF CHILE, XLV ARGENTINE CONGRESS OF GENETICS, 9-12 October 2016. PROCEEDINGS. Montevideo (Uruguay): SAG, 2016. p. 292| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| 9. | | MONTEVERDE, E.; BLANCO, P.H.; BONNECARRERE, V.; GUTIÉRREZ, L.; ROSAS, J.E.; QUERO, G.; BARBERIÁN, N.; GARAYCOCHEA, S.; FERNANDEZ, S.; MCCOUCH, S. Implementing Genomic Selection in a temperate Rice Breeding Program. [P0716] In: International Plant & Animal Genome, Conference PAG XXIV, "The largest Ag-genomics Meeting in the World San Diego, CA, USA; January 9-13, 2016. [Abstract]| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 10. | | Galván, G.Colnago, P.Noguez, M.Peluffo, S.González Idiarte, H.Cortizas, J.M.Malutín, L.Musso, D.González Ravelino, P.Monteverde, E.Speranza, P. Mejoramiento por resistencia a enfermedades en cebolla (Proyecto INIA-FPTA) Las Brujas, Canelones (Uruguay): INIA, 2009. p. 1 (INIA Serie Actividades de Difusión ; 564) INIA Las Brujas| Biblioteca(s): INIA Las Brujas; INIA Tacuarembó. |
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| 11. | | SPINDEL, J.E.; MONTEVERDE, E.; BEGUM, H.; AKDEMIR, D.; COLLARD, B.; REDOÑA, E.; BLANCO, P.H.; PÉREZ DE VIDA, F.; BONNECARRERE, V.; GUTIÉRREZ, L.; ROSAS, J.E.; QUERO, G.; BERBERIÁN, N.; GARAYCOCHEA, S.; FERNANDEZ, S.; JANNINK, J.L.; MCCOUCH, S. GS + de novo GWAS in Tropical and Temperate Irrigated Rice Breeding Programs. [W809] In: International Plant & Animal Genome, Conference PAG XXIV, "The largest Ag-genomics Meeting in the World San Diego, CA, USA; January 9-13, 2016. [Abstract] .| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 12. | | QUERO, G.; GUTIÉRREZ, L.; MONTEVERDE, E.; BLANCO, P.H.; PÉREZ DE VIDA, F.; ROSAS, J.E.; FERNANDEZ, S.; GARAYCOCHEA, S.; MC COUCH, S.; BERBERIAN, N.; SIMONDI, S.; BONNECARRERE, V. Genome-wide association study using historical breeding populations discovers genomic regions involved in high-quality rice. Plant Genome, 2018, Volume 11, Article number 170076. Open Access. Article history: Received: Aug 25, 2017 // Accepted: Apr 09, 2018 // Published: July 12, 2018.
Permissions: This is an open access article under the CC BY-NC-ND license. Proper attribution is required for reuse. No permissions are needed...| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas; INIA Treinta y Tres. |
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| 13. | | ROSAS, J.E.; MARTÍNEZ, S.; BLANCO, P.H.; PÉREZ DE VIDA, F.; GARAYCOCHEA, S.; FERNANDEZ, S.; IRIARTE, W.; MONTEVERDE, E.; BERBERIÁN, N.; BONNECARRERE, V.; GUTIERREZ, L.; MCCOUCH, S.; JANNINK, J.L. Mapeo asociativo de resistencia a enfermedades del tallo y la vaina en arroz.[Poster]. In: Jornadas de Agrobiotecnologìa, (9a., 2015, Montevideo)| Biblioteca(s): INIA Treinta y Tres. |
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| 14. | | ROSAS, J.E.; MARTÍNEZ, S.; BLANCO, P.H.; PÉREZ DE VIDA, F.; BONNECARRERE, V.; MOSQUERA, G.; CRUZ, M.; GARAYCOCHEA, S.; MONTEVERDE, E.; GERMAN, S.; MCCOUCH, S.; JANNINK, J.; GUTIÉRREZ, L. Resistance to multiple temperate and tropical stem and sheath diseases of rice. The Plant Genome, 2018, v. 11, no. 1. art. 170029. OPEN ACCESS. Doi: https://doi.org/10.3835/plantgenome2017.03.0029 p. 1-13. History paper: Received 29 Mar. 2017, Accepted 19 Sep. 2017. Publihed online December 14, 2017.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : -- - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| Registros recuperados : 14 | |
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